Default methods for accessing and subsetting MLG objects.
# S4 method for MLG initialize(.Object, mlg) # S4 method for MLG,ANY,ANY,ANY [(x, i, j, ..., all = FALSE, drop = TRUE) # S4 method for MLG,ANY,ANY,ANY [(x, i, j) <- value # S4 method for MLG show(object) # S4 method for MLG length(x) # S4 method for MLG,ANY Ops(e1, e2) # S4 method for MLG Math(x) # S4 method for MLG Math2(x, digits) # S4 method for MLG Summary(x, ..., na.rm = FALSE)
| .Object | a character, "MLG" |
|---|---|
| mlg | a vector where each element assigns the multilocus genotype of that individual in the data set. |
| x | an MLG object |
| i | a vector of integers or logical values to index the MLG vector. |
| j | One of
|
| ... | passed on to summary methods |
| all | a logical value indicating whether or not to return the subset of all MLG values or only the numeric. |
| value | the vector of MLGs to replace. For internal use only. |
| object | an MLG object. |
| e1 | an MLG object |
| e2 | a number |
| digits | the number of digits to retain |
| na.rm | passed on to summary methods |